Journal: Scientific Reports

Article Title: Microbial membrane transport genes in maize rhizosphere under fertilization – a preliminary study

doi: 10.1038/s41598-024-80606-9

Figure Lengend Snippet: Abundance of microbial transport genes in the rhizosphere soil under treatments. The meaning of the gene abbreviations are: sec-independent protein translocase protein TatA ( tatA ), sec-independent protein translocase protein TatB ( tatB ), sec-independent protein translocase protein TatC ( tatC ), preprotein translocase subunit SecA ( secA ), preprotein translocase subunit SecB ( secB ), preprotein translocase subunit SecY ( secY ), preprotein translocase subunit SecD ( secD ), preprotein translocase subunit SecF ( secF ), SecD/SecF fusion protein ( secDF ), preprotein translocase subunit SecG ( secG ), preprotein translocase subunit SecE ( secE ), D-allose transport system substrate-binding protein ( alsB ), D-allose transport system ATP-binding protein [EC:3.6.3.17] ( alsA ), L-arabinose transport system substrate-binding protein ( araF ), L-arabinose transport system permease protein ( araH ), L-arabinose transport system ATP-binding protein [EC:3.6.3.17] ( araG ), lysine/arginine/ornithine transport system substrate-binding protein ( argT ), histidine transport system permease protein ( hisQ ), histidine transport system permease protein ( hisM ), histidine transport system ATP-binding protein [EC:3.6.3.21] ( hisP ), arginine transport system permease protein ( artM ), vitamin B12 transport system substrate-binding protein ( btuF ), vitamin B12 transport system permease protein ( btuC ), vitamin B12 transport system ATP-binding protein [EC:3.6.3.33] ( btuD ), sulfate transport system ATP-binding protein [EC:3.6.3.25] ( cysA ), sulfate transport system permease protein ( cysW ), sulfate transport system permease protein ( cysU ), dipeptide transport system substrate-binding protein ( dppA ), dipeptide transport system ATP-binding protein ( dppF ), dipeptide transport system permease protein ( dppB ), dipeptide transport system permease protein ( dppC ), dipeptide transport system ATP-binding protein ( dppD ), glutamine transport system substrate-binding protein ( glnH ), branched-chain amino acid transport system substrate-binding protein ( livK ), branched-chain amino acid transport system ATP-binding protein ( livG ), branched-chain amino acid transport system ATP-binding protein ( livF ), branched-chain amino acid transport system permease protein ( livH ), branched-chain amino acid transport system permease protein ( livM ), lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-] ( lptB ), lipopolysaccharide export system permease protein ( lptG ), lipopolysaccharide export system permease protein ( lptF ), AI-2 transport system substrate-binding protein ( lsrB ), AI-2 transport system permease protein ( lsrC ), ego; AI-2 transport system ATP-binding protein ( lsrA ), AI-2 transport system permease protein ( lsrD ), maltose/maltodextrin transport system substrate-binding protein ( malE ), maltose/maltodextrin transport system permease protein ( malF ), maltose/maltodextrin transport system permease protein ( malG ), maltose/maltodextrin transport system ATP-binding protein [EC:3.6.3.19] ( malK ), D-methionine transport system substrate-binding protein ( metQ ), D-methionine transport system ATP-binding protein ( metN ), D-methionine transport system permease protein ( metI ), methyl-galactoside transport system substrate-binding protein ( mglB ), methyl-galactoside transport system ATP-binding protein [EC:3.6.3.17] ( mglA ), methyl-galactoside transport system permease protein ( mglC ), molybdate transport system ATP-binding protein ( modF ), molybdate transport system ATP-binding protein [EC:3.6.3.29] ( modC ), molybdate transport system permease protein ( modB ), molybdate transport system substrate-binding protein ( modA ), spermidine/putrescine transport system substrate-binding protein ( potD ), spermidine/putrescine transport system ATP-binding protein [EC:3.6.3.31] ( potA ), spermidine/putrescine transport system permease protein ( potB ), putrescine transport system ATP-binding protein ( potG ), spermidine/putrescine transport system permease protein ( potC ), putrescine transport system permease protein ( potH ), putrescine transport system permease protein ( potI ), putrescine transport system substrate-binding protein ( potF ), glycine betaine/proline transport system permease protein ( proW ), glycine betaine/proline transport system substrate-binding protein ( proX ), glycine betaine/proline transport system ATP-binding protein [EC:3.6.3.32] ( proV ), ribose transport system substrate-binding protein ( rbsB ), ribose transport system permease protein ( rbsC ), ribose transport system ATP-binding protein [EC:3.6.3.17] ( rbsA ), sulfonate/nitrate/taurine transport system substrate-binding protein ( tauA ), sulfonate/nitrate/taurine transport system permease protein ( tauC ), sulfonate/nitrate/taurine transport system substrate-binding protein (ssuA), sulfonate/nitrate/taurine transport system permease protein ( ssuC ), thiamine transport system substrate-binding protein ( thiB ), thiamine transport system permease protein ( thiP ), thiamine transport system ATP-binding protein ( thiQ ), D-xylose transport system substrate-binding protein ( xylF ), D-xylose transport system permease protein ( xylH ), D-xylose transport system ATP-binding protein [EC:3.6.3.17] ( xylG ), lipooligosaccharide transport system ATP-binding protein ( nodI ), lipooligosaccharide transport system permease protein ( nodJ ). The treatments are designated as Cn0 (control), N1 (60 kg/ha NPK), N2 (120 kg/ha NPK), Cp8 (8 t/ha compost), and Cp4 (4 t/ha compost).

Article Snippet: The relative abundance of these membrane transport genes varies with treatments, and dppF is the most relatively abundant genes, followed by livF , livG , livH , livK , secA , livM , ssuC , and tauC .

Techniques: Binding Assay, Maltodextrin, Control